Variant report

Variant	rs10053079
Chromosome Location	chr5:36728565-36728566
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10058188	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071552	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077750	1.00[AMR][1000 genomes]
rs10078891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13362284	1.00[AMR][1000 genomes]
rs13436596	1.00[AMR][1000 genomes]
rs16903303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1976376	1.00[AMR][1000 genomes]
rs1976378	1.00[AMR][1000 genomes]
rs293752	1.00[AMR][1000 genomes]
rs9292641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36725800-36729200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:36725800-36729600	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:36726000-36729200	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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