Variant report

Variant	rs16903303
Chromosome Location	chr5:36730935-36730936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10053079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058188	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071552	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077750	1.00[AMR][1000 genomes]
rs10078891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13362284	1.00[AMR][1000 genomes]
rs13436596	1.00[AMR][1000 genomes]
rs1976376	1.00[AMR][1000 genomes]
rs1976378	1.00[AMR][1000 genomes]
rs293752	1.00[AMR][1000 genomes]
rs9292641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36729000-36731200	Enhancers	Fetal Heart	heart
2	chr5:36729200-36744200	Weak transcription	Spleen	Spleen
3	chr5:36729600-36732400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:36730200-36731200	Enhancers	Fetal Muscle Leg	muscle
5	chr5:36730400-36731200	Enhancers	Fetal Muscle Trunk	muscle
6	chr5:36730600-36732200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:36730800-36731200	Enhancers	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links