Variant report

Variant	rs1976378
Chromosome Location	chr5:36710175-36710176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10053079	1.00[AMR][1000 genomes]
rs10058188	1.00[AMR][1000 genomes]
rs10071552	1.00[AMR][1000 genomes]
rs10077750	1.00[AMR][1000 genomes]
rs10078891	1.00[AMR][1000 genomes]
rs13362284	1.00[AMR][1000 genomes]
rs13436596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903303	1.00[AMR][1000 genomes]
rs1976376	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv880571	chr5:36675699-36710205	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36700200-36724200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:36704000-36711000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:36705400-36711400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:36705800-36712600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:36705800-36724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:36706800-36710200	Weak transcription	Fetal Heart	heart
7	chr5:36707400-36710400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:36708600-36711000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:36709200-36721800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:36709600-36713800	Weak transcription	GM12878-XiMat	blood
11	chr5:36710000-36712200	Strong transcription	Primary hematopoietic stem cells	blood
12	chr5:36710000-36714200	Strong transcription	Primary B cells from cord blood	blood
13	chr5:36710000-36721200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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