Variant report

Variant	rs10078891
Chromosome Location	chr5:36752608-36752609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10053079	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10071552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077750	1.00[AMR][1000 genomes]
rs13362284	1.00[AMR][1000 genomes]
rs13436596	1.00[AMR][1000 genomes]
rs16903303	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1976376	1.00[AMR][1000 genomes]
rs1976378	1.00[AMR][1000 genomes]
rs293752	1.00[AMR][1000 genomes]
rs9292641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36747000-36755000	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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