Variant report

Variant	rs1005389
Chromosome Location	chr7:150543648-150543649
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150542584..150544794-chr7:150560485..150563293,2	MCF-7	breast:
2	chr7:150517223..150519461-chr7:150541701..150544355,2	K562	blood:
3	chr7:150541762..150544255-chr7:150551164..150553467,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1005390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10156191	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10269643	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs10273373	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10452847	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12672953	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12703104	0.87[EUR][1000 genomes]
rs2052129	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2071513	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2268998	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2268999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2373876	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4725366	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4725372	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4725949	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs4725955	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4725956	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4725958	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4725960	0.87[EUR][1000 genomes]
rs6950447	0.87[EUR][1000 genomes]
rs6951585	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73165541	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7786439	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7786526	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7788808	0.87[EUR][1000 genomes]
rs7789908	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7793572	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs917806	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs917807	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs917808	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2758140	chr7:150538821-150663697	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2759574	chr7:150538821-150663697	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150539600-150553800	Weak transcription	Liver	Liver
2	chr7:150541800-150544400	Enhancers	Fetal Muscle Leg	muscle
3	chr7:150542200-150543800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:150542200-150544000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:150542800-150543800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:150542800-150544400	Enhancers	Adipose Nuclei	Adipose
7	chr7:150543000-150544200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:150543200-150544400	Weak transcription	Fetal Intestine Small	intestine
9	chr7:150543200-150544800	Weak transcription	Fetal Intestine Large	intestine
10	chr7:150543200-150548600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:150543200-150551200	Weak transcription	Fetal Lung	lung
12	chr7:150543200-150557600	Weak transcription	Right Atrium	heart
13	chr7:150543400-150543800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr7:150543400-150544400	Enhancers	Placenta	Placenta
15	chr7:150543400-150544600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:150543600-150543800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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