Variant report

Variant	rs4725955
Chromosome Location	chr7:150528617-150528618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150526781..150530863-chr7:150531594..150534159,3	K562	blood:
2	chr7:150525562..150527080-chr7:150527872..150530321,2	K562	blood:
3	chr7:150526781..150529717-chr7:150531594..150533626,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1005389	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1005390	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10269643	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10452847	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12672953	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12703104	0.95[EUR][1000 genomes]
rs2192051	0.84[AFR][1000 genomes]
rs4725366	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4725372	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4725949	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4725956	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4725958	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4725960	0.95[EUR][1000 genomes]
rs6950447	0.95[EUR][1000 genomes]
rs6951585	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73165541	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7788808	0.95[EUR][1000 genomes]
rs7789908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7793572	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs917806	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs917807	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs917808	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150522400-150542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:150527000-150528800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:150527400-150530200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr7:150527600-150529000	Enhancers	Stomach Mucosa	stomach
5	chr7:150527600-150529200	Enhancers	Fetal Intestine Small	intestine
6	chr7:150528000-150529000	Enhancers	Ovary	ovary
7	chr7:150528000-150529200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:150528200-150533400	Weak transcription	Right Atrium	heart
9	chr7:150528400-150529400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr7:150528400-150532600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:150528400-150533200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:150528400-150539200	Weak transcription	Liver	Liver
13	chr7:150528600-150528800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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