Variant report

Variant	rs917806
Chromosome Location	chr7:150521852-150521853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr7:150521232-150521896	K562	blood:	n/a	n/a
2	NFYB	chr7:150521501-150521860	K562	blood:	n/a	n/a
3	CBX3	chr7:150521350-150521935	K562	blood:	n/a	n/a
4	SETDB1	chr7:150521415-150522096	K562	blood:	n/a	n/a
5	NFYA	chr7:150521012-150521896	K562	blood:	n/a	n/a
6	SP1	chr7:150521431-150521867	A549	lung:	n/a	chr7:150521619-150521628 chr7:150521617-150521629 chr7:150521618-150521627 chr7:150521614-150521628 chr7:150521617-150521629
7	YY1	chr7:150521458-150522034	K562	blood:	n/a	n/a
8	YY1	chr7:150521495-150521977	K562	blood:	n/a	n/a

Variant related genes	Relation type
AOC1	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1005389	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs1005390	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs10264084	1.00[JPT][hapmap]
rs10269643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10273373	0.85[CEU][hapmap]
rs10452847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11760854	1.00[JPT][hapmap]
rs11762854	1.00[JPT][hapmap]
rs11763311	1.00[JPT][hapmap]
rs11768123	1.00[JPT][hapmap]
rs11771771	1.00[JPT][hapmap]
rs12670489	1.00[JPT][hapmap]
rs12672953	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17173650	1.00[JPT][hapmap]
rs17173651	1.00[JPT][hapmap]
rs17173652	1.00[JPT][hapmap]
rs17258890	1.00[JPT][hapmap]
rs2052129	0.85[CEU][hapmap]
rs2192051	0.82[ASN][1000 genomes]
rs2215562	1.00[JPT][hapmap]
rs2215563	1.00[JPT][hapmap]
rs2215564	1.00[JPT][hapmap]
rs2888686	1.00[JPT][hapmap]
rs4266560	1.00[JPT][hapmap]
rs4618613	1.00[JPT][hapmap]
rs4725366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725372	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4725949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4725955	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4725956	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4725958	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6951585	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73165541	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs732416	1.00[JPT][hapmap]
rs741063	1.00[JPT][hapmap]
rs758888	1.00[JPT][hapmap]
rs758894	1.00[JPT][hapmap]
rs758895	1.00[JPT][hapmap]
rs7781870	1.00[JPT][hapmap]
rs7789908	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7793572	0.84[EUR][1000 genomes]
rs917807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917808	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918664	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150503400-150528000	Weak transcription	Ovary	ovary
2	chr7:150512000-150522800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:150518200-150522000	Weak transcription	Fetal Stomach	stomach
4	chr7:150518400-150523200	Weak transcription	Right Atrium	heart
5	chr7:150518600-150522400	Weak transcription	Fetal Intestine Small	intestine
6	chr7:150519800-150523400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:150519800-150525200	Enhancers	Fetal Heart	heart
8	chr7:150520200-150523600	Enhancers	Placenta	Placenta
9	chr7:150520800-150522000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:150520800-150522800	Enhancers	Liver	Liver
11	chr7:150521200-150522400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:150521600-150522400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:150521800-150523200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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