Variant report

Variant	rs7789908
Chromosome Location	chr7:150530196-150530197
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150526781..150530863-chr7:150531594..150534159,3	K562	blood:
2	chr7:150525562..150527080-chr7:150527872..150530321,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1005389	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1005390	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10264084	1.00[JPT][hapmap]
rs10269643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273373	0.85[CEU][hapmap]
rs10452847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760854	1.00[JPT][hapmap]
rs11762854	1.00[JPT][hapmap]
rs11763311	1.00[JPT][hapmap]
rs11768123	1.00[JPT][hapmap]
rs11771771	1.00[JPT][hapmap]
rs12670489	1.00[JPT][hapmap]
rs12672953	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12703104	0.85[EUR][1000 genomes]
rs17173650	1.00[JPT][hapmap]
rs17173651	1.00[JPT][hapmap]
rs17173652	1.00[JPT][hapmap]
rs17258890	1.00[JPT][hapmap]
rs2052129	0.85[CEU][hapmap]
rs2192051	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2215562	1.00[JPT][hapmap]
rs2215563	1.00[JPT][hapmap]
rs2215564	1.00[JPT][hapmap]
rs2888686	1.00[JPT][hapmap]
rs4266560	1.00[JPT][hapmap]
rs4618613	1.00[JPT][hapmap]
rs4725366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4725372	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4725949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4725955	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4725956	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4725958	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4725960	0.85[EUR][1000 genomes]
rs6950447	0.85[EUR][1000 genomes]
rs6951585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165541	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs732416	1.00[JPT][hapmap]
rs741063	1.00[JPT][hapmap]
rs758888	1.00[JPT][hapmap]
rs758894	1.00[JPT][hapmap]
rs758895	1.00[JPT][hapmap]
rs7781870	1.00[JPT][hapmap]
rs7788808	0.85[EUR][1000 genomes]
rs7793572	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs917806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs917807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs917808	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9918664	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150522400-150542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:150527400-150530200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr7:150528200-150533400	Weak transcription	Right Atrium	heart
4	chr7:150528400-150532600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:150528400-150533200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:150528400-150539200	Weak transcription	Liver	Liver
7	chr7:150529000-150530200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links