Variant report

Variant	rs10054047
Chromosome Location	chr5:107497172-107497173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10063866	0.85[AMR][1000 genomes]
rs12515105	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12523367	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13159387	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17161080	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4957550	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6596770	0.85[AMR][1000 genomes]
rs6596771	0.83[AMR][1000 genomes]
rs6870573	0.99[EUR][1000 genomes]
rs6883082	0.85[AMR][1000 genomes]
rs7732946	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475200-107527400	Weak transcription	Liver	Liver
4	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
6	chr5:107480400-107500000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:107481000-107498400	Weak transcription	Fetal Intestine Large	intestine
9	chr5:107481600-107504400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:107482000-107510800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:107482400-107498400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:107492200-107519800	Weak transcription	Ovary	ovary
13	chr5:107494000-107504600	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:107494400-107499400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:107494800-107503400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
17	chr5:107496800-107528800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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