Variant report

Variant	rs10063866
Chromosome Location	chr5:107504326-107504327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10036343	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs10041907	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10054047	0.85[AMR][1000 genomes]
rs10063449	0.82[EUR][1000 genomes]
rs10071595	0.85[EUR][1000 genomes]
rs10072270	0.87[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs10075907	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs10463586	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10477892	0.90[CHB][hapmap]
rs11743651	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs13153782	0.90[CHB][hapmap]
rs13161833	0.81[CHB][hapmap]
rs13162374	0.90[CHB][hapmap]
rs13162979	0.90[CHB][hapmap]
rs13173916	0.90[CHB][hapmap]
rs13178456	0.81[EUR][1000 genomes]
rs13190222	0.90[CHB][hapmap]
rs1544741	0.90[CHB][hapmap]
rs158283	0.81[CHB][hapmap]
rs158604	0.81[CHB][hapmap]
rs158606	0.81[CHB][hapmap]
rs158607	0.90[CHB][hapmap]
rs1588496	0.90[CHB][hapmap]
rs17161232	0.90[CHB][hapmap]
rs17385448	0.90[CHB][hapmap]
rs17452232	0.90[CHB][hapmap]
rs1828457	0.90[CHB][hapmap]
rs1849011	0.88[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs1849012	0.90[CHB][hapmap]
rs1862196	0.90[CHB][hapmap]
rs2029104	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs2044709	0.86[EUR][1000 genomes]
rs2044710	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs2112306	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2122158	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs2167001	0.90[EUR][1000 genomes]
rs2416188	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs286764	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286767	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286769	0.81[CHB][hapmap]
rs286771	0.81[CHB][hapmap]
rs288230	0.81[CHB][hapmap]
rs2900122	0.90[CHB][hapmap]
rs2922423	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs2922424	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs2922426	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs2922427	0.89[EUR][1000 genomes]
rs2922428	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs2922429	0.90[EUR][1000 genomes]
rs2922430	0.84[EUR][1000 genomes]
rs2922433	0.88[EUR][1000 genomes]
rs2941693	0.90[CHB][hapmap]
rs2941694	0.90[CHB][hapmap]
rs2941697	0.90[CHB][hapmap]
rs2966795	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2966797	0.90[EUR][1000 genomes]
rs2966799	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs2966830	0.81[CHB][hapmap]
rs2966832	0.90[CHB][hapmap]
rs2966834	0.90[CHB][hapmap]
rs34298471	0.86[EUR][1000 genomes]
rs34388	0.81[CHB][hapmap]
rs34413	0.89[CHB][hapmap]
rs34414	0.90[CHB][hapmap]
rs34423	0.81[CHB][hapmap]
rs4541643	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs4957553	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs4957751	0.86[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs4957753	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs4957755	0.90[CHB][hapmap]
rs55896795	0.82[EUR][1000 genomes]
rs57222565	0.86[EUR][1000 genomes]
rs6594298	0.90[CHB][hapmap]
rs6594299	0.90[CHB][hapmap]
rs6596770	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6596771	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6596777	0.88[EUR][1000 genomes]
rs6875297	0.86[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs6883082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7708996	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7711964	0.90[CHB][hapmap]
rs7713705	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7717747	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs7724056	0.81[CHB][hapmap]
rs7726298	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs9326725	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs962680	0.91[EUR][1000 genomes]
rs988436	0.90[CHB][hapmap]
rs988437	0.90[CHB][hapmap]
rs989001	0.88[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475200-107527400	Weak transcription	Liver	Liver
4	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
6	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:107481600-107504400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:107482000-107510800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:107492200-107519800	Weak transcription	Ovary	ovary
10	chr5:107494000-107504600	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
12	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
13	chr5:107497800-107504600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:107502800-107505600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:107502800-107505600	Enhancers	Fetal Heart	heart
16	chr5:107503000-107504600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:107503400-107504400	Weak transcription	HMEC	breast
18	chr5:107503400-107504600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:107503400-107505600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr5:107504000-107505400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:107504200-107504800	Enhancers	Brain Germinal Matrix	brain

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