Variant report

Variant	rs10072270
Chromosome Location	chr5:107670724-107670725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10036343	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10041907	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10063449	0.94[EUR][1000 genomes]
rs10063866	0.87[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs10071595	0.89[EUR][1000 genomes]
rs10075907	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10463586	0.83[EUR][1000 genomes]
rs11743651	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs11744374	0.94[EUR][1000 genomes]
rs13178456	0.95[EUR][1000 genomes]
rs1849011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2029104	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2044709	0.83[EUR][1000 genomes]
rs2044710	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2112306	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2122158	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2167001	0.88[EUR][1000 genomes]
rs2416188	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs28497144	0.92[EUR][1000 genomes]
rs286764	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs286767	0.86[EUR][1000 genomes]
rs2922423	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2922424	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2922426	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2922427	0.87[EUR][1000 genomes]
rs2922428	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2922429	0.88[EUR][1000 genomes]
rs2922433	0.85[EUR][1000 genomes]
rs2966795	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2966797	0.88[EUR][1000 genomes]
rs2966799	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs34298471	0.90[EUR][1000 genomes]
rs4541643	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4957553	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs4957751	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4957753	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4957756	0.84[CHB][hapmap]
rs55896795	0.94[EUR][1000 genomes]
rs57222565	0.90[EUR][1000 genomes]
rs6596770	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6596771	0.86[EUR][1000 genomes]
rs6596777	0.86[EUR][1000 genomes]
rs6875297	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6883082	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7708996	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7713705	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs7717747	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[EUR][1000 genomes]
rs7726298	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9326725	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs962680	0.87[EUR][1000 genomes]
rs989001	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882685	chr5:107564746-107695558	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv882687	chr5:107595383-107695558	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv882688	chr5:107595383-107715746	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1032608	chr5:107627193-107671907	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1019657	chr5:107629430-107677211	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1025828	chr5:107634887-107676322	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1030202	chr5:107634887-107680335	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1018396	chr5:107634887-107684450	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1033956	chr5:107640933-107680335	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1029462	chr5:107645821-107680335	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107615000-107705600	Weak transcription	Left Ventricle	heart
2	chr5:107620600-107678600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:107634200-107679400	Weak transcription	Fetal Intestine Large	intestine
4	chr5:107639800-107697200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:107648000-107704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:107654600-107709400	Weak transcription	Pancreas	Pancrea
7	chr5:107656000-107686400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr5:107657400-107678200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:107658600-107709200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr5:107659400-107700000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:107660800-107671400	Weak transcription	Fetal Stomach	stomach
12	chr5:107660800-107679200	Weak transcription	Fetal Intestine Small	intestine
13	chr5:107661600-107687600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:107661800-107696400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:107662200-107681400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:107662800-107682800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:107663200-107678200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:107663400-107678000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:107663800-107709400	Weak transcription	Primary T cells from cord blood	blood
20	chr5:107664200-107678200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr5:107666600-107672600	Weak transcription	Lung	lung
22	chr5:107667600-107709200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr5:107668600-107678200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr5:107668600-107679400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:107668600-107706800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:107668800-107699600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:107669200-107685400	Weak transcription	Adipose Nuclei	Adipose
28	chr5:107669200-107708400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:107669400-107700400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:107669600-107670800	Strong transcription	Primary B cells from cord blood	blood
31	chr5:107670000-107686400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:107670000-107702400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr5:107670200-107670800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr5:107670400-107679800	Weak transcription	Psoas Muscle	Psoas

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