Variant report

Variant	rs6883082
Chromosome Location	chr5:107511609-107511610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10036343	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10041907	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10054047	0.85[AMR][1000 genomes]
rs10063449	0.82[EUR][1000 genomes]
rs10063866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10071595	0.85[EUR][1000 genomes]
rs10072270	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10075907	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs10463586	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477892	0.84[CHB][hapmap]
rs11743651	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs11744374	0.80[EUR][1000 genomes]
rs13153782	0.82[CHB][hapmap]
rs13162979	0.83[CHB][hapmap]
rs13173916	0.82[CHB][hapmap]
rs13178456	0.81[EUR][1000 genomes]
rs13190222	0.84[CHB][hapmap]
rs1544741	0.84[CHB][hapmap]
rs158607	0.84[CHB][hapmap]
rs1588496	0.83[CHB][hapmap]
rs17161232	0.82[CHB][hapmap]
rs17385448	0.82[CHB][hapmap]
rs17452232	0.84[CHB][hapmap]
rs1828457	0.84[CHB][hapmap]
rs1849011	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1849012	0.82[CHB][hapmap]
rs1862196	0.84[CHB][hapmap]
rs2029104	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2044709	0.86[EUR][1000 genomes]
rs2044710	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs2112306	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2122158	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2167001	0.90[EUR][1000 genomes]
rs2416188	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs286764	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286767	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2900122	0.84[CHB][hapmap]
rs2922423	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs2922424	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2922426	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs2922427	0.89[EUR][1000 genomes]
rs2922428	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2922429	0.90[EUR][1000 genomes]
rs2922430	0.84[EUR][1000 genomes]
rs2922433	0.88[EUR][1000 genomes]
rs2941693	0.84[CHB][hapmap]
rs2941694	0.84[CHB][hapmap]
rs2941697	0.82[CHB][hapmap]
rs2966795	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs2966797	0.90[EUR][1000 genomes]
rs2966799	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2966832	0.82[CHB][hapmap]
rs2966834	0.83[CHB][hapmap]
rs34298471	0.86[EUR][1000 genomes]
rs34413	0.82[CHB][hapmap]
rs34414	0.82[CHB][hapmap]
rs34422	0.82[CHB][hapmap]
rs4541643	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs4957553	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4957751	0.87[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs4957753	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs4957755	0.82[CHB][hapmap]
rs55896795	0.82[EUR][1000 genomes]
rs57222565	0.86[EUR][1000 genomes]
rs6594298	0.82[CHB][hapmap]
rs6594299	0.84[CHB][hapmap]
rs6596770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596771	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596777	0.88[EUR][1000 genomes]
rs6875297	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6896653	0.82[CHB][hapmap]
rs7708996	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7711964	0.84[CHB][hapmap]
rs7713705	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7717747	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7726298	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9326725	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs962680	0.91[EUR][1000 genomes]
rs988436	0.82[CHB][hapmap]
rs988437	0.84[CHB][hapmap]
rs989001	0.89[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107475200-107527400	Weak transcription	Liver	Liver
2	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
3	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:107492200-107519800	Weak transcription	Ovary	ovary
5	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
6	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
7	chr5:107504800-107525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:107505400-107536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107505600-107514400	Weak transcription	Fetal Heart	heart
10	chr5:107505600-107521800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:107506200-107518400	Weak transcription	Psoas Muscle	Psoas
12	chr5:107506200-107529400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:107506600-107522800	Weak transcription	Fetal Muscle Leg	muscle
14	chr5:107506600-107524600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:107508400-107523400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:107510000-107520800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:107510600-107532000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:107510800-107521000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:107511000-107528000	Weak transcription	Fetal Intestine Small	intestine
20	chr5:107511400-107548400	Weak transcription	Primary B cells from cord blood	blood

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