The 2.0 version of rSNPBase

Variant report

Variant rs962680
Chromosome Location chr5:107559199-107559200
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:32 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:107516200-107584800 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr5:107517000-107571800 Weak transcription Primary T helper cells PMA-I stimulated --
3 chr5:107546600-107590800 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr5:107547000-107577200 Weak transcription Fetal Intestine Large intestine
5 chr5:107549200-107578000 Weak transcription Pancreas Pancrea
6 chr5:107549400-107561200 Weak transcription Fetal Intestine Small intestine
7 chr5:107550200-107561400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr5:107550800-107559400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr5:107551200-107569000 Weak transcription Primary T cells from cord blood blood
10 chr5:107551400-107560600 Weak transcription Liver Liver
11 chr5:107551400-107561600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr5:107551800-107567200 Weak transcription Primary B cells from cord blood blood
13 chr5:107551800-107568800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr5:107551800-107569600 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr5:107552000-107578800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr5:107552000-107585000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr5:107553000-107575400 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr5:107553000-107584800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:107553400-107590800 Weak transcription Primary T helper cells fromperipheralblood blood
20 chr5:107554600-107574200 Weak transcription Primary B cells from peripheral blood blood
21 chr5:107556200-107561000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr5:107556200-107561600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr5:107556200-107566000 Weak transcription Primary hematopoietic stem cells blood
24 chr5:107556400-107580200 Weak transcription Primary T cells fromperipheralblood blood
25 chr5:107556600-107559400 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr5:107557200-107568800 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr5:107557400-107560000 Weak transcription Primary monocytes fromperipheralblood blood
28 chr5:107558000-107581000 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr5:107558200-107559800 Weak transcription Fetal Heart heart
30 chr5:107558200-107561600 Weak transcription Right Ventricle heart
31 chr5:107559000-107559600 Enhancers Muscle Satellite Cultured Cells --
32 chr5:107559000-107560000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015