Variant report

Variant	rs158283
Chromosome Location	chr5:107469524-107469525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107460221..107462771-chr5:107469152..107471669,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10063866	0.81[CHB][hapmap]
rs11742777	0.90[JPT][hapmap]
rs13153782	0.90[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap]
rs13161833	0.84[JPT][hapmap]
rs13162374	0.90[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs13162979	0.89[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs13173916	0.90[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap]
rs13190222	0.90[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs149457	0.85[EUR][1000 genomes]
rs15158	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs158170	0.85[ASN][1000 genomes]
rs158173	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs158175	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs158186	0.86[EUR][1000 genomes]
rs158285	0.84[EUR][1000 genomes]
rs158604	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs158605	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs158606	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs158607	0.90[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs158608	0.85[ASN][1000 genomes]
rs158609	0.83[CEU][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs17161232	0.90[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap];0.83[TSI][hapmap]
rs17385448	0.90[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs17452232	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs1849012	0.90[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap]
rs185361	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286741	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs286743	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs286744	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs286749	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs286750	0.91[CEU][hapmap];0.93[TSI][hapmap]
rs286769	1.00[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs286771	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs286776	0.91[CEU][hapmap]
rs286777	0.89[CEU][hapmap]
rs286779	0.89[CEU][hapmap]
rs286781	0.83[EUR][1000 genomes]
rs286802	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs286809	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs286818	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs288131	1.00[CEU][hapmap];0.96[TSI][hapmap]
rs288143	1.00[CEU][hapmap];0.96[TSI][hapmap]
rs288144	1.00[CEU][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes]
rs288154	1.00[CEU][hapmap]
rs288157	1.00[CEU][hapmap]
rs288161	1.00[CEU][hapmap]
rs288164	1.00[CEU][hapmap];0.89[TSI][hapmap]
rs288168	0.81[CEU][hapmap]
rs288169	1.00[CEU][hapmap]
rs288171	1.00[CEU][hapmap]
rs288172	1.00[CEU][hapmap];0.89[TSI][hapmap]
rs288173	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs288180	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs288230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs288232	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs288233	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs288238	0.83[EUR][1000 genomes]
rs289227	1.00[CEU][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs289228	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2900122	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs2941693	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs2941697	0.90[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap]
rs2966830	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2966832	0.90[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap]
rs34261817	0.83[ASN][1000 genomes]
rs34383	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs34388	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs34409	0.82[ASN][1000 genomes]
rs34413	0.88[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs34414	0.90[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs34415	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34420	0.89[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[ASN][1000 genomes]
rs34421	0.85[ASN][1000 genomes]
rs34422	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs34423	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs34424	0.91[CEU][hapmap];0.87[TSI][hapmap]
rs34427	0.91[CEU][hapmap];0.87[TSI][hapmap]
rs34428	0.91[CEU][hapmap];0.87[TSI][hapmap]
rs34432	0.91[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs34527417	0.82[ASN][1000 genomes]
rs34771507	0.82[ASN][1000 genomes]
rs34854088	0.81[ASN][1000 genomes]
rs35903369	0.83[ASN][1000 genomes]
rs40067	0.86[EUR][1000 genomes]
rs40070	0.90[CEU][hapmap]
rs40071	0.91[CEU][hapmap]
rs41129	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41131	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs457378	0.91[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518369	chr5:107459529-107469524	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107468600-107475000	Weak transcription	Aorta	Aorta

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