Variant report

Variant	rs158285
Chromosome Location	chr5:107423482-107423483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107422254..107425406-chr5:107428129..107431708,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs149457	0.95[EUR][1000 genomes]
rs15158	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs158172	0.94[ASN][1000 genomes]
rs158175	0.86[EUR][1000 genomes]
rs158186	0.97[EUR][1000 genomes]
rs158283	0.84[EUR][1000 genomes]
rs188274	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286749	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286750	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286753	0.96[ASN][1000 genomes]
rs286781	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286802	0.90[EUR][1000 genomes]
rs286809	0.90[EUR][1000 genomes]
rs286818	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs288131	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288139	0.96[ASN][1000 genomes]
rs288143	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288144	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288145	0.93[ASN][1000 genomes]
rs288146	0.93[ASN][1000 genomes]
rs288147	0.93[ASN][1000 genomes]
rs288149	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288151	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs288152	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288154	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs288157	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs288161	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs288164	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs288168	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs288169	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs288170	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs288171	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs288172	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288173	0.86[EUR][1000 genomes]
rs288180	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs288228	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs288230	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs288232	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288233	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs288237	0.96[ASN][1000 genomes]
rs288238	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs289227	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs289228	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs289230	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34383	0.87[EUR][1000 genomes]
rs34415	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34432	0.86[EUR][1000 genomes]
rs365981	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs370216	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs372894	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs40067	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs406139	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41129	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41131	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs457378	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107414800-107427800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107416200-107424200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:107416800-107427400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:107419200-107436600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:107420000-107424800	Weak transcription	Fetal Intestine Small	intestine
9	chr5:107420000-107433000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:107420200-107424400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:107420200-107426600	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:107420200-107426800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:107420200-107427800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:107421000-107426800	Weak transcription	Fetal Lung	lung
15	chr5:107421200-107426000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:107421400-107426200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:107421400-107426800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:107421400-107437000	Weak transcription	Psoas Muscle	Psoas
19	chr5:107421600-107425600	Weak transcription	Left Ventricle	heart
20	chr5:107421800-107424000	Weak transcription	Spleen	Spleen
21	chr5:107423000-107426600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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