Variant report

Variant	rs149457
Chromosome Location	chr5:107438057-107438058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107436261..107438688-chr5:107440363..107442788,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs15158	0.89[EUR][1000 genomes]
rs158173	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs158175	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs158186	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158283	0.85[EUR][1000 genomes]
rs158285	0.95[EUR][1000 genomes]
rs188274	0.91[EUR][1000 genomes]
rs286741	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs286743	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs286744	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs286749	0.92[EUR][1000 genomes]
rs286750	0.91[EUR][1000 genomes]
rs286776	0.84[ASN][1000 genomes]
rs286777	0.84[ASN][1000 genomes]
rs286779	0.82[ASN][1000 genomes]
rs286781	0.95[EUR][1000 genomes]
rs286802	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs286809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs286818	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs288131	0.90[EUR][1000 genomes]
rs288143	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs288144	0.90[EUR][1000 genomes]
rs288149	0.90[EUR][1000 genomes]
rs288151	0.90[EUR][1000 genomes]
rs288152	0.90[EUR][1000 genomes]
rs288154	0.90[EUR][1000 genomes]
rs288157	0.90[EUR][1000 genomes]
rs288161	0.89[EUR][1000 genomes]
rs288164	0.88[EUR][1000 genomes]
rs288168	0.88[EUR][1000 genomes]
rs288169	0.88[EUR][1000 genomes]
rs288170	0.83[EUR][1000 genomes]
rs288171	0.86[EUR][1000 genomes]
rs288172	0.86[EUR][1000 genomes]
rs288173	0.81[EUR][1000 genomes]
rs288180	0.81[EUR][1000 genomes]
rs288230	0.89[EUR][1000 genomes]
rs288232	0.95[EUR][1000 genomes]
rs288233	0.89[EUR][1000 genomes]
rs288238	0.93[EUR][1000 genomes]
rs289227	0.92[EUR][1000 genomes]
rs289228	0.92[EUR][1000 genomes]
rs34383	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34415	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34428	0.84[ASN][1000 genomes]
rs34432	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs365981	0.82[EUR][1000 genomes]
rs370216	0.90[EUR][1000 genomes]
rs372894	0.90[EUR][1000 genomes]
rs40067	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs406139	0.82[EUR][1000 genomes]
rs41129	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41131	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs457378	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107416000-107443600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107427400-107443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107428200-107438200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107436600-107439000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:107436800-107438200	Enhancers	Brain Cingulate Gyrus	brain
7	chr5:107437000-107438400	Enhancers	Left Ventricle	heart
8	chr5:107437000-107438400	Enhancers	Psoas Muscle	Psoas
9	chr5:107437000-107438400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr5:107437000-107439600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:107437200-107438200	Enhancers	Fetal Heart	heart
12	chr5:107437200-107438200	Weak transcription	Fetal Lung	lung
13	chr5:107437400-107438800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:107437400-107439600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:107437400-107439600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:107437400-107445400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:107437600-107438400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:107437600-107438400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:107437600-107438400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:107437600-107438400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr5:107437600-107438400	Enhancers	Right Ventricle	heart
22	chr5:107437600-107438400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr5:107437600-107439400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr5:107437600-107439800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr5:107437800-107438600	Weak transcription	Colon Smooth Muscle	Colon
26	chr5:107437800-107440400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr5:107437800-107441400	Weak transcription	Brain Hippocampus Middle	brain
28	chr5:107437800-107446000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:107437800-107447600	Weak transcription	Right Atrium	heart
30	chr5:107437800-107463800	Weak transcription	Esophagus	oesophagus
31	chr5:107438000-107438400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:107438000-107438400	Flanking Active TSS	Osteobl	bone
33	chr5:107438000-107439200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:107438000-107439600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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