Variant report

Variant	rs288131
Chromosome Location	chr5:107382857-107382858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10035292	0.89[CHB][hapmap]
rs11242662	0.90[CHB][hapmap]
rs149457	0.90[EUR][1000 genomes]
rs15158	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158172	0.87[ASN][1000 genomes]
rs158173	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs158175	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs158186	0.91[EUR][1000 genomes]
rs158283	1.00[CEU][hapmap];0.96[TSI][hapmap]
rs158285	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs158415	0.90[CHB][hapmap]
rs158604	0.84[CEU][hapmap]
rs158605	0.84[CEU][hapmap]
rs158606	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs158609	0.84[CEU][hapmap];0.86[TSI][hapmap]
rs17385448	0.81[TSI][hapmap]
rs188274	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs286741	0.91[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs286743	0.91[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs286744	0.91[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs286749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286750	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286753	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.96[ASN][1000 genomes]
rs286771	0.83[CEU][hapmap]
rs286776	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs286777	0.90[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs286779	0.90[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs286781	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286794	0.90[CHB][hapmap]
rs286802	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs286809	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs286818	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs288139	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs288143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288144	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs288145	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs288146	0.89[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs288147	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs288149	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288151	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs288152	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288154	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288164	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288168	0.86[ASW][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288170	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288172	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288173	1.00[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs288180	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs288183	0.89[ASW][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs288228	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs288230	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs288232	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs288233	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs288237	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs288238	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs289227	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs289228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs289230	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34383	0.91[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs34388	0.84[CEU][hapmap]
rs34414	0.81[TSI][hapmap]
rs34415	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34422	0.83[CEU][hapmap]
rs34423	0.91[CEU][hapmap]
rs34424	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs34427	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs34428	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.83[TSI][hapmap]
rs34432	0.91[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.96[TSI][hapmap];0.81[EUR][1000 genomes]
rs365981	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs370216	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs372894	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40067	0.91[EUR][1000 genomes]
rs40070	0.91[CEU][hapmap]
rs40071	0.91[CEU][hapmap]
rs406139	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41129	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41131	0.91[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs457378	0.91[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.83[TSI][hapmap]
rs4957738	0.89[CHB][hapmap]
rs7728371	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107364000-107390000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:107381400-107389600	Weak transcription	Aorta	Aorta
3	chr5:107381800-107390000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:107382000-107386000	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:107382400-107383200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr5:107382400-107384200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:107382400-107384800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:107382600-107383000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:107382600-107383200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:107382600-107383200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:107382600-107383200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:107382600-107383400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:107382600-107383400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:107382800-107383000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:107382800-107383400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:107382800-107383400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:107382800-107383400	Enhancers	Left Ventricle	heart
18	chr5:107382800-107383600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:107382800-107384000	Strong transcription	Fetal Intestine Small	intestine

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