Variant report

Variant	rs10035292
Chromosome Location	chr5:107402223-107402224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10058029	0.94[ASN][1000 genomes]
rs10060325	0.92[ASN][1000 genomes]
rs10070525	0.80[JPT][hapmap]
rs11242661	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11242662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12515105	0.80[CHB][hapmap]
rs12523367	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs15158	0.84[CHB][hapmap]
rs158415	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17161080	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs286749	0.90[CHB][hapmap]
rs286750	0.89[CHB][hapmap]
rs286753	0.89[CHB][hapmap]
rs286794	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288131	0.89[CHB][hapmap]
rs288139	0.89[CHB][hapmap]
rs288143	0.89[CHB][hapmap]
rs288144	0.89[CHB][hapmap]
rs288145	0.90[CHB][hapmap]
rs288146	0.89[CHB][hapmap]
rs288147	0.89[CHB][hapmap]
rs288154	0.84[CHB][hapmap]
rs288157	0.90[CHB][hapmap]
rs288161	0.90[CHB][hapmap]
rs288164	0.89[CHB][hapmap]
rs288169	0.89[CHB][hapmap]
rs288171	0.90[CHB][hapmap]
rs288172	0.83[CHB][hapmap]
rs288228	0.90[CHB][hapmap]
rs288237	0.90[CHB][hapmap]
rs289227	0.89[CHB][hapmap]
rs289228	0.90[CHB][hapmap]
rs289230	0.89[CHB][hapmap]
rs4957738	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs6865439	0.92[ASN][1000 genomes]
rs6867631	0.94[ASN][1000 genomes]
rs7728371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107396800-107409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:107399200-107403400	Weak transcription	Fetal Lung	lung
4	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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