Variant report

Variant	rs4957738
Chromosome Location	chr5:107359745-107359746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10035292	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs10058029	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10060325	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10070525	0.81[EUR][1000 genomes]
rs11242661	0.91[ASN][1000 genomes]
rs11242662	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12515105	0.80[CHB][hapmap]
rs12523367	0.81[CHB][hapmap]
rs15158	0.84[CHB][hapmap]
rs158415	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17161080	0.81[CHB][hapmap]
rs286749	0.90[CHB][hapmap]
rs286750	0.89[CHB][hapmap]
rs286753	0.89[CHB][hapmap]
rs286794	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs288131	0.89[CHB][hapmap]
rs288139	0.89[CHB][hapmap]
rs288143	0.89[CHB][hapmap]
rs288144	0.89[CHB][hapmap]
rs288145	0.90[CHB][hapmap]
rs288146	0.89[CHB][hapmap]
rs288147	0.89[CHB][hapmap]
rs288154	0.84[CHB][hapmap]
rs288157	0.90[CHB][hapmap]
rs288161	0.90[CHB][hapmap]
rs288164	0.89[CHB][hapmap]
rs288169	0.89[CHB][hapmap]
rs288171	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs288172	0.83[CHB][hapmap]
rs288228	0.90[CHB][hapmap]
rs288237	0.90[CHB][hapmap]
rs289227	0.89[CHB][hapmap]
rs289228	0.90[CHB][hapmap]
rs289230	0.89[CHB][hapmap]
rs6865439	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6867631	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7728371	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
2	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
3	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
6	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:107352800-107364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:107355000-107360400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107355000-107361000	Weak transcription	Primary B cells from cord blood	blood
10	chr5:107359400-107361400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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