Variant report

Variant	rs288143
Chromosome Location	chr5:107395548-107395549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10035292	0.89[CHB][hapmap]
rs11242662	0.90[CHB][hapmap]
rs149457	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs15158	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158172	0.89[ASN][1000 genomes]
rs158173	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs158175	1.00[CEU][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs158186	0.91[EUR][1000 genomes]
rs158283	1.00[CEU][hapmap];0.96[TSI][hapmap]
rs158285	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs158415	0.90[CHB][hapmap]
rs158604	0.84[CEU][hapmap]
rs158605	0.84[CEU][hapmap]
rs158606	0.83[CEU][hapmap];0.81[TSI][hapmap]
rs158609	0.84[CEU][hapmap];0.86[TSI][hapmap]
rs17385448	0.81[TSI][hapmap]
rs188274	0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs286741	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs286743	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs286744	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs286749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286750	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286753	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.95[ASN][1000 genomes]
rs286771	0.83[CEU][hapmap]
rs286776	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs286777	0.90[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs286779	0.90[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs286781	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286794	0.90[CHB][hapmap]
rs286802	1.00[CEU][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs286809	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs286818	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes]
rs288131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288139	1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.95[ASN][1000 genomes]
rs288144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288145	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs288146	1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.98[ASN][1000 genomes]
rs288147	1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.98[ASN][1000 genomes]
rs288149	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs288151	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288152	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288154	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs288164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288168	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288170	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288172	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs288173	1.00[CEU][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs288180	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs288183	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs288228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs288230	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs288232	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288233	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs288237	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs288238	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs289227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs289228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs289230	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs34383	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34388	0.84[CEU][hapmap]
rs34414	0.81[TSI][hapmap]
rs34415	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34422	0.83[CEU][hapmap]
rs34423	0.91[CEU][hapmap]
rs34424	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs34427	0.91[CEU][hapmap];0.84[CHD][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs34428	0.91[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs34432	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.81[EUR][1000 genomes]
rs365981	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs370216	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs372894	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs40067	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs40070	0.91[CEU][hapmap]
rs40071	0.91[CEU][hapmap]
rs406139	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41129	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs41131	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs457378	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs4957738	0.89[CHB][hapmap]
rs7728371	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107383400-107396400	Weak transcription	Right Ventricle	heart
2	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
3	chr5:107390000-107396400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107390600-107396400	Weak transcription	Gastric	stomach
5	chr5:107390600-107397600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:107390600-107401600	Weak transcription	Left Ventricle	heart
7	chr5:107395400-107398800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:107395400-107400000	Weak transcription	Psoas Muscle	Psoas

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