Variant report

Variant	rs288173
Chromosome Location	chr5:107352294-107352295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs149457	0.81[EUR][1000 genomes]
rs15158	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs158173	0.91[CEU][hapmap]
rs158175	1.00[CEU][hapmap]
rs158186	0.82[EUR][1000 genomes]
rs158283	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs158285	0.86[EUR][1000 genomes]
rs158604	0.84[CEU][hapmap]
rs158605	0.84[CEU][hapmap]
rs158606	0.83[CEU][hapmap]
rs158609	0.84[CEU][hapmap]
rs188274	0.90[EUR][1000 genomes]
rs286741	0.91[CEU][hapmap]
rs286743	0.91[CEU][hapmap]
rs286744	0.91[CEU][hapmap]
rs286749	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs286750	0.91[CEU][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs286771	0.83[CEU][hapmap]
rs286776	0.91[CEU][hapmap]
rs286777	0.90[CEU][hapmap]
rs286779	0.90[CEU][hapmap]
rs286781	0.84[EUR][1000 genomes]
rs286802	1.00[CEU][hapmap]
rs286809	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs286818	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs288131	1.00[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs288143	1.00[CEU][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs288144	1.00[CEU][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs288149	0.91[EUR][1000 genomes]
rs288151	0.91[EUR][1000 genomes]
rs288152	0.91[EUR][1000 genomes]
rs288154	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs288157	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs288161	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs288164	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs288168	0.92[EUR][1000 genomes]
rs288169	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs288170	0.89[EUR][1000 genomes]
rs288171	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs288172	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs288180	1.00[CEU][hapmap];0.84[GIH][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes]
rs288183	0.82[TSI][hapmap]
rs288230	1.00[CEU][hapmap]
rs288232	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs288233	0.83[CEU][hapmap]
rs288238	0.87[EUR][1000 genomes]
rs289227	1.00[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs289228	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs34383	0.91[CEU][hapmap]
rs34388	0.84[CEU][hapmap]
rs34415	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs34422	0.83[CEU][hapmap]
rs34423	0.91[CEU][hapmap]
rs34424	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs34427	0.91[CEU][hapmap]
rs34428	0.91[CEU][hapmap]
rs34432	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs365981	0.99[EUR][1000 genomes]
rs370216	0.91[EUR][1000 genomes]
rs372894	0.91[EUR][1000 genomes]
rs40067	0.82[EUR][1000 genomes]
rs40070	0.91[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs40071	0.91[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs406139	0.99[EUR][1000 genomes]
rs41129	1.00[CEU][hapmap]
rs41131	0.91[CEU][hapmap]
rs457378	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107339200-107352400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
6	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
7	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
9	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
11	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:107347800-107353800	Weak transcription	Spleen	Spleen
13	chr5:107349800-107353400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr5:107350600-107353000	Weak transcription	Fetal Intestine Large	intestine
15	chr5:107350600-107353400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:107350800-107356200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:107351400-107355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:107351600-107354000	Weak transcription	Placenta	Placenta
19	chr5:107351800-107352400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:107351800-107352600	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links