Variant report

Variant	rs288183
Chromosome Location	chr5:107348180-107348181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10070525	0.90[CHB][hapmap]
rs15158	0.90[JPT][hapmap]
rs158173	0.81[JPT][hapmap]
rs2416522	0.89[CHB][hapmap]
rs286749	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs286750	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs286753	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs286776	0.81[JPT][hapmap]
rs286777	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs286779	0.80[JPT][hapmap]
rs286809	0.81[JPT][hapmap]
rs286818	0.81[JPT][hapmap]
rs288131	0.89[ASW][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs288139	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs288143	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs288144	0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs288145	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs288146	0.84[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs288147	0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs288154	0.90[JPT][hapmap]
rs288157	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs288161	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs288164	1.00[ASW][hapmap];0.83[CHB][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.85[YRI][hapmap]
rs288168	1.00[ASW][hapmap];0.81[LWK][hapmap]
rs288169	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs288171	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs288172	1.00[ASW][hapmap];0.89[CHB][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.82[TSI][hapmap];0.85[YRI][hapmap]
rs288173	0.82[TSI][hapmap]
rs288180	0.95[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs288184	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs288187	0.83[EUR][1000 genomes]
rs288188	0.83[EUR][1000 genomes]
rs288190	0.96[TSI][hapmap]
rs288193	0.96[TSI][hapmap]
rs288228	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs288237	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs289227	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs289228	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs289230	0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs2916577	0.96[TSI][hapmap]
rs34383	0.90[JPT][hapmap]
rs34415	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs34428	0.81[JPT][hapmap]
rs34432	0.81[JPT][hapmap]
rs365981	0.85[ASN][1000 genomes]
rs406139	0.85[ASN][1000 genomes]
rs41129	0.81[JPT][hapmap]
rs41131	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs723396	0.90[CHB][hapmap]
rs8180405	0.96[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs288183	FER	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107339200-107352400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
6	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
7	chr5:107339600-107350800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
12	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:107347800-107353800	Weak transcription	Spleen	Spleen
14	chr5:107348000-107348200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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