Variant report

Variant	rs288187
Chromosome Location	chr5:107344426-107344427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10477882	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs176385	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs188275	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2416521	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs288183	0.83[EUR][1000 genomes]
rs288184	0.89[EUR][1000 genomes]
rs288188	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288190	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288191	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288193	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2916577	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7444532	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7707026	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7721143	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8180405	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs867912	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107339200-107352400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
6	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
7	chr5:107339600-107350800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:107342600-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
12	chr5:107344400-107344600	Enhancers	Fetal Brain Male	brain
13	chr5:107344400-107363800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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