Variant report

Variant	rs7721143
Chromosome Location	chr5:107295755-107295756
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107291351..107293032-chr5:107293454..107296133,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10477882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs176385	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs188275	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1946610	0.82[ASN][1000 genomes]
rs2116823	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2416521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288187	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs288188	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs288190	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs288191	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs288193	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2916577	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3925679	0.83[CEU][hapmap]
rs56201157	0.83[ASN][1000 genomes]
rs6596762	0.90[CHB][hapmap]
rs6867577	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6882731	0.83[ASN][1000 genomes]
rs6886275	0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6886766	0.81[ASN][1000 genomes]
rs6896080	0.90[CHB][hapmap]
rs7444532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7707026	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7719708	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs7720904	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs8180405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs867912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9328026	0.90[CHB][hapmap]
rs967489	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107291200-107302000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107295400-107295800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107295400-107295800	Enhancers	Thymus	Thymus
6	chr5:107295400-107303400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:107295600-107295800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:107295600-107295800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:107295600-107295800	Weak transcription	Primary T cells from cord blood	blood

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