Variant report

Variant	rs56201157
Chromosome Location	chr5:107304805-107304806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10477882	0.85[ASN][1000 genomes]
rs2416521	0.85[ASN][1000 genomes]
rs6867577	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7444532	0.83[ASN][1000 genomes]
rs7707026	0.83[ASN][1000 genomes]
rs7721143	0.83[ASN][1000 genomes]
rs8180405	0.85[ASN][1000 genomes]
rs867912	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
2	chr5:107295800-107305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
4	chr5:107301000-107305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:107302400-107308400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:107302400-107309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:107303000-107305800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:107303200-107309200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:107303600-107306000	Enhancers	NHDF-Ad	bronchial
13	chr5:107303600-107306400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:107303800-107305000	Enhancers	NHLF	lung
15	chr5:107303800-107306000	Enhancers	Osteobl	bone
16	chr5:107303800-107306200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:107304000-107305000	Enhancers	HUVEC	blood vessel
18	chr5:107304000-107305400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:107304000-107305800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:107304400-107305000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:107304400-107305000	Enhancers	HMEC	breast
23	chr5:107304400-107305200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:107304400-107305600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:107304400-107305800	Enhancers	NH-A	brain
26	chr5:107304600-107305000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr5:107304600-107305000	Enhancers	Aorta	Aorta
28	chr5:107304600-107305000	Enhancers	Hela-S3	cervix
29	chr5:107304600-107305000	Enhancers	HSMM	muscle
30	chr5:107304600-107305400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:107304600-107305400	Enhancers	NHEK	skin
32	chr5:107304600-107305600	Enhancers	Fetal Heart	heart
33	chr5:107304600-107306000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:107304800-107305000	Enhancers	Gastric	stomach

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