Variant report

Variant	rs10477882
Chromosome Location	chr5:107301128-107301129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs176385	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs188275	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2116823	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2416521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288187	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs288188	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs288190	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs288191	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs288193	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2916577	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56201157	0.85[ASN][1000 genomes]
rs6867577	0.83[ASN][1000 genomes]
rs6886275	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7444532	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7707026	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7721143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8180405	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107291200-107302000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107295400-107303400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:107295800-107301800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107295800-107305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:107298000-107302000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:107300200-107301400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:107300200-107302400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:107300400-107301200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:107300400-107302400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:107300400-107303200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:107300600-107302400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr5:107301000-107302000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:107301000-107305200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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