Variant report

Variant	rs6886275
Chromosome Location	chr5:107291022-107291023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107285431..107288026-chr5:107290064..107292465,2	K562	blood:
2	chr5:107285811..107288026-chr5:107290020..107292465,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10063386	0.85[JPT][hapmap]
rs10070756	0.83[JPT][hapmap]
rs1036212	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10477882	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11745356	0.80[JPT][hapmap]
rs1835978	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs1946610	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2116822	0.85[JPT][hapmap]
rs2116823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2416521	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2916577	0.83[CEU][hapmap]
rs3925679	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4091222	0.82[ASN][1000 genomes]
rs6882731	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6886766	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7444532	0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs7707026	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7716454	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7719354	0.81[JPT][hapmap]
rs7719708	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7720904	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7721143	0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7722766	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs8180405	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs867912	0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs919769	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:107287200-107292000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107287400-107292000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:107287400-107294200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
7	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
8	chr5:107287600-107293200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:107287600-107295400	Weak transcription	Thymus	Thymus
10	chr5:107289200-107293600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:107290400-107292200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107290400-107292600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:107291000-107291200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr5:107291000-107291400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:107291000-107291400	Enhancers	Dnd41	blood
16	chr5:107291000-107291600	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links