Variant report

Variant	rs7716454
Chromosome Location	chr5:107282788-107282789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11745356	0.81[CHB][hapmap]
rs1835978	0.80[CHB][hapmap]
rs1946610	0.81[ASN][1000 genomes]
rs2116823	0.85[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs288190	0.81[CHD][hapmap]
rs288193	0.84[CHD][hapmap]
rs6867577	0.92[CHD][hapmap]
rs6882731	0.90[CHB][hapmap];0.89[CHD][hapmap];0.80[ASN][1000 genomes]
rs6886275	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6886766	0.90[CHB][hapmap];0.89[CHD][hapmap]
rs7719708	0.90[CHB][hapmap]
rs7720904	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs7722766	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs8180405	0.92[CHD][hapmap]
rs919769	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3392473	chr5:107281203-107283101	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7716454	FER	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107273400-107284200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107273600-107287800	Weak transcription	Gastric	stomach
5	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
6	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:107274400-107284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
9	chr5:107275200-107286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107275200-107286600	Weak transcription	Lung	lung
11	chr5:107277800-107285200	Weak transcription	Thymus	Thymus
12	chr5:107278000-107287200	Weak transcription	Pancreas	Pancrea
13	chr5:107278800-107285200	Weak transcription	Fetal Thymus	thymus
14	chr5:107279200-107284200	Weak transcription	Dnd41	blood
15	chr5:107279800-107284000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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