Variant report

Variant	rs1946610
Chromosome Location	chr5:107279093-107279094
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1036212	0.85[AMR][1000 genomes]
rs1835978	0.82[AMR][1000 genomes]
rs2116823	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3925679	0.82[AMR][1000 genomes]
rs4091222	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6882731	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6886275	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6886766	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7716454	0.81[ASN][1000 genomes]
rs7719708	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7720904	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7721143	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107273400-107284200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107273600-107287800	Weak transcription	Gastric	stomach
5	chr5:107273800-107279600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
7	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107274400-107284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
10	chr5:107275200-107286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:107275200-107286600	Weak transcription	Lung	lung
12	chr5:107277800-107285200	Weak transcription	Thymus	Thymus
13	chr5:107278000-107287200	Weak transcription	Pancreas	Pancrea
14	chr5:107278800-107285200	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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