Variant report

Variant	rs3925679
Chromosome Location	chr5:107284514-107284515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1036212	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835978	0.80[CEU][hapmap]
rs1946610	0.82[AMR][1000 genomes]
rs2116823	1.00[CEU][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2916577	0.83[CEU][hapmap]
rs6882731	0.91[TSI][hapmap]
rs6886275	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6886766	0.91[TSI][hapmap]
rs7444532	0.83[CEU][hapmap]
rs7721143	0.83[CEU][hapmap]
rs8180405	0.83[CEU][hapmap]
rs867912	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107273600-107287800	Weak transcription	Gastric	stomach
3	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
4	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
6	chr5:107275200-107286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:107275200-107286600	Weak transcription	Lung	lung
8	chr5:107277800-107285200	Weak transcription	Thymus	Thymus
9	chr5:107278000-107287200	Weak transcription	Pancreas	Pancrea
10	chr5:107278800-107285200	Weak transcription	Fetal Thymus	thymus
11	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:107284200-107284600	Enhancers	Small Intestine	intestine
13	chr5:107284200-107284800	Enhancers	HepG2	liver
14	chr5:107284200-107285200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:107284200-107285200	Enhancers	Dnd41	blood
16	chr5:107284200-107285400	Enhancers	Primary T cells from cord blood	blood
17	chr5:107284400-107285200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:107284400-107286600	Weak transcription	Psoas Muscle	Psoas
19	chr5:107284400-107289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:107284400-107290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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