Variant report

Variant	rs2116823
Chromosome Location	chr5:107294680-107294681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107291351..107293032-chr5:107293454..107296133,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10063386	0.85[JPT][hapmap]
rs10070756	0.83[JPT][hapmap]
rs1036212	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10477882	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs176385	0.81[AMR][1000 genomes]
rs1835978	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs1946610	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2116822	0.85[JPT][hapmap]
rs2416521	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs288190	0.89[CHD][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap]
rs288193	0.92[CHD][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap]
rs2916577	0.83[CEU][hapmap];0.87[CHD][hapmap];0.95[MEX][hapmap]
rs3925679	1.00[CEU][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4091222	0.82[ASN][1000 genomes]
rs6867577	0.85[CHD][hapmap]
rs6882731	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6886275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6886766	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7444532	0.83[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs7707026	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7716454	0.85[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs7719354	0.81[JPT][hapmap]
rs7719708	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7720904	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7721143	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7722766	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs8180405	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs867912	0.80[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs919769	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107287600-107295400	Weak transcription	Thymus	Thymus
4	chr5:107291200-107302000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:107291600-107295400	Weak transcription	Primary T cells from cord blood	blood
6	chr5:107292800-107295600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:107293200-107294800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr5:107294200-107295200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:107294400-107295600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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