Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107291351..107293032-chr5:107293454..107296133,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10063386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10070756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1025493	0.86[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs1025494	0.90[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs11745399	0.82[CHB][hapmap]
rs12659389	0.82[ASN][1000 genomes]
rs12659811	0.82[ASN][1000 genomes]
rs13153403	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2116823	0.85[JPT][hapmap]
rs6596762	0.90[JPT][hapmap]
rs6882731	0.81[JPT][hapmap]
rs6886275	0.85[JPT][hapmap]
rs6886766	0.81[JPT][hapmap]
rs6896080	0.90[JPT][hapmap]
rs7719354	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719708	0.81[JPT][hapmap]
rs7720904	0.81[JPT][hapmap]
rs9328025	0.82[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap]
rs9328026	0.84[CHD][hapmap];0.90[JPT][hapmap]
rs967489	0.83[CHD][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2116822	TMEM232	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107287600-107295400	Weak transcription	Thymus	Thymus
4	chr5:107291200-107302000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:107291600-107295400	Weak transcription	Primary T cells from cord blood	blood
6	chr5:107292800-107295600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:107293200-107294800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr5:107294200-107295200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:107294400-107295600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search: