Variant report

Variant	rs11745399
Chromosome Location	chr5:107270771-107270772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10063386	0.82[CHB][hapmap]
rs10070756	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs1025493	0.86[CHB][hapmap];0.83[AMR][1000 genomes]
rs1025494	0.82[CHB][hapmap];0.83[AMR][1000 genomes]
rs11745356	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12657654	0.85[AMR][1000 genomes]
rs12659389	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12659811	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13153403	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1835978	0.81[JPT][hapmap]
rs2116822	0.82[CHB][hapmap]
rs6882731	0.80[JPT][hapmap]
rs6886766	0.80[JPT][hapmap]
rs7719354	0.86[CHB][hapmap]
rs7719708	0.81[JPT][hapmap]
rs7720904	0.81[JPT][hapmap]
rs7722766	0.85[JPT][hapmap]
rs892008	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919769	0.85[JPT][hapmap]
rs9328025	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107261800-107273400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:107263000-107272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107267000-107270800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:107267400-107273800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:107267800-107273400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:107268600-107273800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:107268800-107273200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:107268800-107273200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:107269600-107271000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:107269800-107271000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:107269800-107271000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:107269800-107271400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:107269800-107271400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:107269800-107273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:107269800-107275200	Weak transcription	Primary B cells from cord blood	blood
18	chr5:107270200-107271200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:107270600-107271000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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