Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10070756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025493	0.86[CHB][hapmap];0.91[CHD][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs1025494	0.90[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs11745399	0.82[CHB][hapmap]
rs12659389	0.82[ASN][1000 genomes]
rs12659811	0.82[ASN][1000 genomes]
rs13153403	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2116822	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116823	0.85[JPT][hapmap]
rs4957733	0.81[ASN][1000 genomes]
rs6596762	0.90[JPT][hapmap]
rs6882731	0.81[JPT][hapmap]
rs6886275	0.85[JPT][hapmap]
rs6886766	0.81[JPT][hapmap]
rs6896080	0.90[JPT][hapmap]
rs7719354	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7719708	0.81[JPT][hapmap]
rs7720904	0.81[JPT][hapmap]
rs9328025	0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs9328026	0.86[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap]
rs967489	0.86[CHD][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10063386	TMEM232	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
2	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:107284400-107289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:107284400-107290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:107286000-107290000	Weak transcription	NHDF-Ad	bronchial
7	chr5:107286800-107291000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:107287200-107292000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:107287400-107290000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107287400-107292000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:107287400-107294200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
13	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
14	chr5:107287600-107293200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:107287600-107295400	Weak transcription	Thymus	Thymus
16	chr5:107287800-107291000	Weak transcription	Dnd41	blood
17	chr5:107288600-107291000	Weak transcription	Primary T cells from cord blood	blood

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