Variant report

Variant	rs9328025
Chromosome Location	chr5:107266840-107266841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10063386	0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs10070756	0.88[JPT][hapmap]
rs11745356	0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11745399	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs13153403	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2116822	0.82[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap]
rs7719354	0.86[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap]
rs7722766	0.81[JPT][hapmap]
rs892008	0.87[ASN][1000 genomes]
rs919769	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107261800-107273400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:107262400-107267800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107262400-107268800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:107263000-107272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107263200-107267400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
8	chr5:107266600-107267000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:107266600-107267000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:107266800-107268800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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