Variant report

Variant	rs10070756
Chromosome Location	chr5:107288003-107288004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10063386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025493	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1025494	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs11745356	0.82[JPT][hapmap]
rs11745399	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs12659389	0.82[ASN][1000 genomes]
rs12659811	0.82[ASN][1000 genomes]
rs13153403	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs2116822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116823	0.83[JPT][hapmap]
rs4957733	0.81[ASN][1000 genomes]
rs6596762	0.89[JPT][hapmap]
rs6886275	0.83[JPT][hapmap]
rs6896080	0.89[JPT][hapmap]
rs7719354	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9328025	0.88[JPT][hapmap]
rs9328026	0.88[JPT][hapmap]
rs967489	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
2	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:107284400-107289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:107284400-107290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:107285800-107288600	Enhancers	Primary T cells from cord blood	blood
7	chr5:107286000-107290000	Weak transcription	NHDF-Ad	bronchial
8	chr5:107286800-107291000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:107287200-107292000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:107287400-107290000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:107287400-107292000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr5:107287400-107294200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
14	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
15	chr5:107287600-107293200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:107287600-107295400	Weak transcription	Thymus	Thymus
17	chr5:107287800-107291000	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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