Variant report

Variant	rs13153403
Chromosome Location	chr5:107270193-107270194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10063386	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs10070756	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1025493	0.87[CHB][hapmap];0.84[CHD][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1025494	0.83[CHB][hapmap];0.83[AMR][1000 genomes]
rs11745356	0.82[CHB][hapmap];0.95[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745399	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12657654	0.85[AMR][1000 genomes]
rs12659389	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12659811	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2116822	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs7719354	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs7722766	0.81[JPT][hapmap]
rs892008	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919769	0.81[JPT][hapmap]
rs9328025	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107261800-107273400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:107263000-107272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:107267000-107270800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:107267400-107273800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:107267600-107270200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:107267600-107270600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:107267800-107273400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:107268600-107273800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:107268800-107273200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:107268800-107273200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:107269600-107271000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:107269800-107271000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:107269800-107271000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:107269800-107271400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:107269800-107271400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:107269800-107273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:107269800-107275200	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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