Variant report

Variant	rs892008
Chromosome Location	chr5:107267081-107267082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1025493	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1025494	0.81[AMR][1000 genomes]
rs11745356	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745399	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12657654	0.83[AMR][1000 genomes]
rs12659389	0.80[EUR][1000 genomes]
rs12659811	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13153403	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328025	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107261800-107273400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:107262400-107267800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107262400-107268800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:107263000-107272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107263200-107267400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
8	chr5:107266800-107268800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:107267000-107268800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107267000-107270800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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