Variant report

Variant	rs6886766
Chromosome Location	chr5:107276804-107276805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10063386	0.81[JPT][hapmap]
rs10066056	0.84[JPT][hapmap]
rs11745356	0.85[JPT][hapmap]
rs11745399	0.80[JPT][hapmap]
rs12659666	1.00[YRI][hapmap]
rs17382278	1.00[YRI][hapmap]
rs17383035	1.00[YRI][hapmap]
rs1835978	0.89[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes]
rs1946610	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2042187	1.00[YRI][hapmap]
rs2116822	0.81[JPT][hapmap]
rs2116823	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs288190	0.86[CHD][hapmap]
rs288193	0.89[CHD][hapmap];0.85[MEX][hapmap]
rs2916577	0.84[CHD][hapmap];0.81[MEX][hapmap]
rs3925679	0.91[TSI][hapmap]
rs4091222	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4144476	1.00[YRI][hapmap]
rs4144478	1.00[YRI][hapmap]
rs6865057	1.00[YRI][hapmap]
rs6867577	0.82[CHD][hapmap]
rs6882731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6886275	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7716454	0.90[CHB][hapmap];0.89[CHD][hapmap]
rs7719708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7720904	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7721143	0.81[ASN][1000 genomes]
rs7722766	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs8180405	0.80[CHB][hapmap];0.97[CHD][hapmap];0.85[MEX][hapmap]
rs919769	0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107273400-107284200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107273600-107287800	Weak transcription	Gastric	stomach
5	chr5:107273800-107279600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
7	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107274400-107284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
10	chr5:107275000-107277000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:107275200-107286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:107275200-107286600	Weak transcription	Lung	lung
13	chr5:107276200-107277600	Weak transcription	Thymus	Thymus

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