Variant report

Variant	rs1835978
Chromosome Location	chr5:107265051-107265052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10066056	0.95[JPT][hapmap]
rs11745356	0.85[JPT][hapmap]
rs11745399	0.81[JPT][hapmap]
rs1946610	0.82[AMR][1000 genomes]
rs2116823	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs3925679	0.80[CEU][hapmap]
rs6882731	0.89[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes]
rs6886275	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs6886766	0.89[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes]
rs7716454	0.80[CHB][hapmap]
rs7719708	0.89[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes]
rs7720904	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7722766	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs919769	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107261800-107265800	Weak transcription	Thymus	Thymus
3	chr5:107261800-107273400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:107262000-107265600	Weak transcription	Fetal Thymus	thymus
5	chr5:107262400-107265800	Weak transcription	Dnd41	blood
6	chr5:107262400-107267800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:107262400-107268800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:107263000-107272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:107263200-107267400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:107264400-107265800	Enhancers	Primary T cells from cord blood	blood
11	chr5:107265000-107265200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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