Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107261563..107265755-chr5:107273102..107276597,3	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10063386	0.81[JPT][hapmap]
rs10066056	0.84[JPT][hapmap]
rs11745356	0.85[JPT][hapmap]
rs11745399	0.81[JPT][hapmap]
rs1835978	0.89[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes]
rs1946610	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2116822	0.81[JPT][hapmap]
rs2116823	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4091222	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6882731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6886275	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6886766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7444532	0.80[CHB][hapmap]
rs7716454	0.90[CHB][hapmap]
rs7720904	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7721143	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs7722766	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs8180405	0.80[CHB][hapmap]
rs867912	0.80[CHB][hapmap]
rs919769	0.85[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv969971	chr5:107271363-107275367	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107269800-107275200	Weak transcription	Primary B cells from cord blood	blood
4	chr5:107271200-107274600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:107272800-107274600	Enhancers	Fetal Brain Female	brain
6	chr5:107273000-107275000	Enhancers	Fetal Lung	lung
7	chr5:107273400-107284200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:107273600-107275200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr5:107273600-107276800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:107273600-107287800	Weak transcription	Gastric	stomach
11	chr5:107273800-107275200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:107273800-107276200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:107273800-107279600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
15	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:107274400-107284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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