Variant report

Variant	rs7444532
Chromosome Location	chr5:107309348-107309349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10477882	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs176385	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs188275	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2116823	0.83[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs2416521	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288187	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs288188	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs288190	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs288191	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs288193	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2916577	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3925679	0.83[CEU][hapmap]
rs56201157	0.83[ASN][1000 genomes]
rs6596762	0.85[CHB][hapmap]
rs6867577	0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6886275	0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs6896080	0.85[CHB][hapmap]
rs7707026	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7719708	0.80[CHB][hapmap]
rs7720904	0.80[CHB][hapmap]
rs7721143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8180405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs867912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9328026	0.85[CHB][hapmap]
rs967489	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:107302400-107309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:107305000-107313400	Weak transcription	Gastric	stomach
8	chr5:107305200-107310000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:107305400-107313600	Weak transcription	NHEK	skin
10	chr5:107307000-107310000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:107307000-107310600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107307600-107309800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung
14	chr5:107308600-107309400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:107308800-107309800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:107309000-107310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:107309000-107314000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
19	chr5:107309200-107309400	Enhancers	HUES6 Cell Line	embryonic stem cell

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