Variant report

Variant	rs176385
Chromosome Location	chr5:107317370-107317371
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10477882	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17160804	0.81[AMR][1000 genomes]
rs188275	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116823	0.81[AMR][1000 genomes]
rs2416521	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288187	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs288188	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs288190	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288191	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288193	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2916577	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7444532	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7707026	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7721143	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8180405	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs867912	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
4	chr5:107312800-107317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:107313400-107317400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:107313800-107318600	Weak transcription	Stomach Mucosa	stomach
7	chr5:107313800-107321000	Weak transcription	Lung	lung
8	chr5:107314400-107320400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107314600-107320800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:107315200-107317400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr5:107316200-107318400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:107316200-107320000	Weak transcription	Dnd41	blood
14	chr5:107317000-107317400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:107317000-107317400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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