Variant report

Variant	rs158173
Chromosome Location	chr5:107478850-107478851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12515105	0.86[CHB][hapmap]
rs12523367	0.86[CHB][hapmap]
rs149457	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs15158	0.92[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap]
rs158175	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158186	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs158283	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs17161080	0.86[CHB][hapmap]
rs185361	0.88[EUR][1000 genomes]
rs286741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286749	0.92[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs286750	0.83[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs286753	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs286776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286802	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286809	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286818	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288131	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs288139	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs288143	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs288144	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs288145	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs288146	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs288147	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs288154	0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs288157	0.92[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs288161	0.92[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs288164	0.91[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs288169	0.89[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs288171	0.92[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs288172	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs288173	0.91[CEU][hapmap]
rs288180	0.91[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs288183	0.81[JPT][hapmap]
rs288228	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs288230	0.92[CEU][hapmap]
rs288232	0.91[CEU][hapmap]
rs288237	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs289227	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs289228	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs289230	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs34383	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34415	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34423	1.00[CEU][hapmap]
rs34424	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs34427	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34432	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs40067	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs40070	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs40071	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs41129	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41131	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs457378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475000-107482400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:107475200-107527400	Weak transcription	Liver	Liver
5	chr5:107475600-107479000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:107475600-107479000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
8	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
9	chr5:107476400-107479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:107477600-107486000	Weak transcription	Psoas Muscle	Psoas
11	chr5:107478800-107480000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:107478800-107488400	Weak transcription	Fetal Lung	lung

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