Variant report

Variant	rs158175
Chromosome Location	chr5:107462500-107462501
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107460221..107462771-chr5:107469152..107471669,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs149457	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs15158	1.00[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs158173	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158186	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs158283	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs158285	0.86[EUR][1000 genomes]
rs158604	0.81[CEU][hapmap]
rs158605	0.81[CEU][hapmap]
rs188274	0.82[EUR][1000 genomes]
rs286741	0.90[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286743	0.90[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286744	0.90[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs286749	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs286750	0.89[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs286753	0.84[JPT][hapmap]
rs286776	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286777	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs286779	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286781	0.86[EUR][1000 genomes]
rs286802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286809	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs286818	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs288131	1.00[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs288143	1.00[CEU][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs288144	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs288146	0.85[JPT][hapmap]
rs288149	0.81[EUR][1000 genomes]
rs288151	0.81[EUR][1000 genomes]
rs288152	0.81[EUR][1000 genomes]
rs288154	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs288157	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs288161	1.00[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs288164	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs288168	0.89[CEU][hapmap]
rs288169	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs288171	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs288172	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs288173	1.00[CEU][hapmap]
rs288180	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs288228	0.90[JPT][hapmap]
rs288230	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs288232	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs288233	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs288237	0.85[JPT][hapmap]
rs288238	0.84[EUR][1000 genomes]
rs289227	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs289228	1.00[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs2900122	0.81[CEU][hapmap]
rs34383	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34388	0.81[CEU][hapmap]
rs34415	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34422	0.81[CEU][hapmap]
rs34423	0.90[CEU][hapmap]
rs34424	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs34427	0.89[CEU][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34428	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34432	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs370216	0.81[EUR][1000 genomes]
rs372894	0.81[EUR][1000 genomes]
rs40067	0.86[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs40070	0.89[CEU][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs40071	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs41129	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41131	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs457378	0.89[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv518369	chr5:107459529-107469524	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107437800-107463800	Weak transcription	Esophagus	oesophagus
3	chr5:107449000-107467200	Weak transcription	Aorta	Aorta
4	chr5:107460800-107465000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:107461600-107462600	Enhancers	GM12878-XiMat	blood

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