Variant report

Variant	rs158605
Chromosome Location	chr5:107526098-107526099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107523461..107526217-chr5:107531060..107533605,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10051605	0.86[JPT][hapmap]
rs10477419	0.86[JPT][hapmap]
rs10477892	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11742777	0.90[JPT][hapmap]
rs11747188	0.86[JPT][hapmap]
rs13153782	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs13161833	0.84[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs13162374	0.80[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13162979	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13173916	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs13190222	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs15158	0.86[CEU][hapmap]
rs1544741	0.86[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes]
rs158170	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158175	0.81[CEU][hapmap]
rs158283	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs158604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158607	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158608	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158609	1.00[CEU][hapmap];0.92[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1588496	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs17161232	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs17385448	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17452232	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1828457	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs1849012	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs185361	0.86[ASN][1000 genomes]
rs1862196	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs2052464	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs286749	0.86[CEU][hapmap]
rs286769	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286809	0.84[CEU][hapmap]
rs286818	0.86[CEU][hapmap]
rs288131	0.84[CEU][hapmap]
rs288143	0.84[CEU][hapmap]
rs288144	0.84[CEU][hapmap]
rs288145	0.81[CEU][hapmap]
rs288154	0.86[CEU][hapmap]
rs288157	0.86[CEU][hapmap]
rs288161	0.86[CEU][hapmap]
rs288164	0.84[CEU][hapmap]
rs288169	0.80[CEU][hapmap]
rs288171	0.86[CEU][hapmap]
rs288172	0.84[CEU][hapmap]
rs288173	0.84[CEU][hapmap]
rs288180	0.84[CEU][hapmap]
rs288230	0.86[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap]
rs288232	0.84[CEU][hapmap]
rs288237	0.81[CEU][hapmap]
rs289227	0.84[CEU][hapmap]
rs289228	0.86[CEU][hapmap]
rs289230	0.81[CEU][hapmap]
rs2900122	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes]
rs2941693	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs2941694	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs2941697	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2966824	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2966830	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes]
rs2966832	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs2966834	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs34261817	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34409	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34413	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34414	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34415	0.86[CEU][hapmap]
rs34420	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34421	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34423	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs34527417	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34747859	0.87[AMR][1000 genomes]
rs34771507	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34854088	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35903369	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41129	0.86[CEU][hapmap]
rs4957755	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs4957756	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs62359544	0.84[AMR][1000 genomes]
rs6594298	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs6594299	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs6594300	0.82[AMR][1000 genomes]
rs6896653	0.84[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs71592749	0.84[AMR][1000 genomes]
rs7711964	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs7724056	0.80[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes]
rs988436	0.80[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs988437	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107475200-107527400	Weak transcription	Liver	Liver
2	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
3	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
4	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
5	chr5:107505400-107536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:107506200-107529400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:107510600-107532000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:107511000-107528000	Weak transcription	Fetal Intestine Small	intestine
9	chr5:107511400-107548400	Weak transcription	Primary B cells from cord blood	blood
10	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:107516800-107551400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:107517000-107529000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:107518000-107532000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:107518800-107527400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:107519400-107527000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr5:107519600-107527400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:107521000-107526400	Weak transcription	Lung	lung
19	chr5:107521400-107527400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr5:107521400-107528800	Weak transcription	Ovary	ovary
21	chr5:107521400-107528800	Weak transcription	HSMM	muscle
22	chr5:107521400-107529000	Weak transcription	Fetal Stomach	stomach
23	chr5:107521400-107529400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:107521600-107526400	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:107521600-107528600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr5:107521800-107536400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr5:107522000-107527600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:107522400-107535400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:107525200-107528800	Weak transcription	HSMMtube	muscle
30	chr5:107526000-107550800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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