Variant report

Variant	rs34261817
Chromosome Location	chr5:107553851-107553852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10477892	0.85[EUR][1000 genomes]
rs10477895	0.86[EUR][1000 genomes]
rs13153782	0.93[EUR][1000 genomes]
rs13161833	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13162374	1.00[ASN][1000 genomes]
rs13162979	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173916	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13190222	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1544741	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs158170	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs158283	0.83[ASN][1000 genomes]
rs158604	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs158605	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs158606	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158607	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158608	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs158609	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1588496	0.86[EUR][1000 genomes]
rs17385448	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17452232	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1828457	0.85[EUR][1000 genomes]
rs1849012	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs185361	0.87[ASN][1000 genomes]
rs1862196	0.86[EUR][1000 genomes]
rs2052464	0.85[EUR][1000 genomes]
rs2416189	0.85[EUR][1000 genomes]
rs286769	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs286771	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2900122	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2941693	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2941694	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2941697	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2966824	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2966830	0.88[EUR][1000 genomes]
rs2966832	0.88[EUR][1000 genomes]
rs2966834	0.86[EUR][1000 genomes]
rs34388	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34409	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34413	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34414	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34420	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34421	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34422	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34423	0.96[ASN][1000 genomes]
rs34527417	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34747859	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34771507	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34854088	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35903369	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957755	0.85[EUR][1000 genomes]
rs62359544	0.88[EUR][1000 genomes]
rs6594299	0.86[EUR][1000 genomes]
rs6594300	0.85[EUR][1000 genomes]
rs6896653	0.85[EUR][1000 genomes]
rs71592749	0.88[EUR][1000 genomes]
rs7711964	0.88[EUR][1000 genomes]
rs7724056	0.85[EUR][1000 genomes]
rs988436	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs988437	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr5:107546600-107590800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:107547000-107577200	Weak transcription	Fetal Intestine Large	intestine
5	chr5:107548800-107556000	Weak transcription	Left Ventricle	heart
6	chr5:107549200-107578000	Weak transcription	Pancreas	Pancrea
7	chr5:107549400-107557600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:107549400-107561200	Weak transcription	Fetal Intestine Small	intestine
9	chr5:107550200-107561400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:107550800-107559400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:107551200-107559000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:107551200-107569000	Weak transcription	Primary T cells from cord blood	blood
13	chr5:107551400-107560600	Weak transcription	Liver	Liver
14	chr5:107551400-107561600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:107551800-107556000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:107551800-107567200	Weak transcription	Primary B cells from cord blood	blood
17	chr5:107551800-107568800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:107551800-107569600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:107552000-107578800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:107552000-107585000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr5:107552600-107554200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:107553000-107555600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:107553000-107575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:107553000-107584800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:107553200-107555800	Weak transcription	Fetal Heart	heart
26	chr5:107553400-107590800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:107553600-107557400	Weak transcription	Fetal Lung	lung

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