Variant report

Variant	rs286769
Chromosome Location	chr5:107518561-107518562
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10051605	0.86[JPT][hapmap]
rs10063866	0.81[CHB][hapmap]
rs10477419	0.86[JPT][hapmap]
rs10477892	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11742777	0.90[JPT][hapmap]
rs11747188	0.86[JPT][hapmap]
rs13153782	0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs13161833	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13162374	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13162979	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13173916	0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs13190222	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1544741	0.90[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs158170	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158283	1.00[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs158604	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158605	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158606	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs158607	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs158608	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158609	0.92[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1588496	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17161232	0.90[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs17385448	0.90[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17452232	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1828457	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1849012	0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs185361	0.88[ASN][1000 genomes]
rs1862196	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs2052464	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs286741	0.83[YRI][hapmap]
rs286744	0.83[YRI][hapmap]
rs286771	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286776	0.83[YRI][hapmap]
rs288230	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs2900122	0.83[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2941693	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2941694	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2941697	0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2966824	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2966830	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2966832	0.90[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs2966834	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs34261817	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34388	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34413	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34414	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34420	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34421	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34422	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34423	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs34424	0.91[MKK][hapmap]
rs34428	0.82[MKK][hapmap];0.83[YRI][hapmap]
rs34527417	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34747859	0.83[EUR][1000 genomes]
rs34771507	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34854088	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35903369	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs40071	0.82[YRI][hapmap]
rs4957755	0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs4957756	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs62359544	0.83[EUR][1000 genomes]
rs6594298	0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs6594299	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6896653	0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs71592749	0.83[EUR][1000 genomes]
rs7711964	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7724056	0.92[JPT][hapmap]
rs988436	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs988437	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107475200-107527400	Weak transcription	Liver	Liver
2	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
3	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:107492200-107519800	Weak transcription	Ovary	ovary
5	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
6	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
7	chr5:107504800-107525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:107505400-107536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107505600-107521800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:107506200-107529400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:107506600-107522800	Weak transcription	Fetal Muscle Leg	muscle
12	chr5:107506600-107524600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:107508400-107523400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:107510000-107520800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:107510600-107532000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:107510800-107521000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:107511000-107528000	Weak transcription	Fetal Intestine Small	intestine
18	chr5:107511400-107548400	Weak transcription	Primary B cells from cord blood	blood
19	chr5:107512800-107519800	Weak transcription	Fetal Stomach	stomach
20	chr5:107514800-107522800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:107515000-107519200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr5:107516800-107551400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:107517000-107529000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:107517800-107518600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:107517800-107518600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr5:107517800-107518600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr5:107518000-107532000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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