Variant report

Variant	rs13162374
Chromosome Location	chr5:107534576-107534577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10051605	0.86[JPT][hapmap]
rs10063866	0.90[CHB][hapmap]
rs10477419	0.86[JPT][hapmap]
rs10477892	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11742777	0.90[JPT][hapmap]
rs11747188	0.86[JPT][hapmap]
rs13153782	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13161833	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13162979	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13173916	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13175097	0.83[AMR][1000 genomes]
rs13190222	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1363231	0.93[AMR][1000 genomes]
rs1544741	0.86[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs158170	0.99[ASN][1000 genomes]
rs158283	0.90[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs158604	0.81[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs158605	0.80[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs158606	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs158607	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs158608	0.99[ASN][1000 genomes]
rs158609	0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs1588496	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17161232	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17385448	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17452232	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1828457	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1849012	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs185361	0.87[ASN][1000 genomes]
rs1862196	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2052464	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs286769	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs286771	0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs288230	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs2900122	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2941693	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2941694	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2941697	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs2966824	0.88[ASN][1000 genomes]
rs2966830	0.86[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2966832	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2966834	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs34261817	1.00[ASN][1000 genomes]
rs34388	0.81[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs34409	0.96[ASN][1000 genomes]
rs34413	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs34414	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34420	1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs34421	0.99[ASN][1000 genomes]
rs34422	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs34423	0.81[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs34527417	0.99[ASN][1000 genomes]
rs34771507	0.99[ASN][1000 genomes]
rs34854088	0.97[ASN][1000 genomes]
rs35903369	1.00[ASN][1000 genomes]
rs4957755	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4957756	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs62359539	0.83[AMR][1000 genomes]
rs6594298	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6594299	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6596770	0.82[CHB][hapmap]
rs6896653	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7711964	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7724056	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs988436	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs988437	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
2	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
3	chr5:107505400-107536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:107511400-107548400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:107516800-107551400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:107521800-107536400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:107522400-107535400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:107526000-107550800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:107533000-107535600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:107533000-107535600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:107533400-107534600	Enhancers	HSMMtube	muscle
14	chr5:107533600-107535400	Enhancers	Fetal Heart	heart
15	chr5:107534000-107535600	Weak transcription	Psoas Muscle	Psoas

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