Variant report

Variant	rs288238
Chromosome Location	chr5:107410148-107410149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10035292	0.90[CHB][hapmap]
rs11242662	0.89[CHB][hapmap]
rs149457	0.93[EUR][1000 genomes]
rs15158	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs158172	0.93[ASN][1000 genomes]
rs158173	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs158175	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs158186	0.95[EUR][1000 genomes]
rs158283	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs158285	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158415	0.90[CHB][hapmap]
rs158604	0.86[CEU][hapmap]
rs158605	0.86[CEU][hapmap]
rs158606	0.83[CEU][hapmap]
rs158609	0.84[CEU][hapmap]
rs188274	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs286741	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs286743	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs286744	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs286749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286750	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286753	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs286771	0.84[CEU][hapmap]
rs286776	0.92[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs286777	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs286779	0.91[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs286781	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286794	0.89[CHB][hapmap]
rs286802	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs286809	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs286818	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs288131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs288139	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs288143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs288144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs288145	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs288146	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs288147	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs288149	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs288151	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs288152	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs288154	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs288157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs288161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs288164	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288168	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288170	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs288172	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs288173	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs288180	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs288183	0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs288228	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs288230	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs288232	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs288233	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs288237	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs289227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs289228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs289230	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34383	0.92[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs34388	0.86[CEU][hapmap]
rs34415	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34422	0.85[CEU][hapmap]
rs34423	0.92[CEU][hapmap]
rs34424	0.91[CEU][hapmap]
rs34427	0.91[CEU][hapmap]
rs34428	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap]
rs34432	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs365981	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs370216	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs372894	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs40067	0.82[CEU][hapmap];0.95[EUR][1000 genomes]
rs40070	0.92[CEU][hapmap]
rs40071	0.92[CEU][hapmap]
rs406139	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41129	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41131	0.92[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs457378	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[EUR][1000 genomes]
rs4957738	0.90[CHB][hapmap]
rs7728371	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:107404000-107410200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:107406200-107413200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:107409600-107412400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:107409800-107410400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:107410000-107411600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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